Temporal progress of coffee leaf rust and environmental conditions affecting severity in Veracruz State, Mexico


  • Ivan Pale-Ezquivel Universidad Veracruzana/UV, Instituto de Biotecnología y Ecología Aplicada/INBIOTECA, Xalapa, Veracruz, México. https://orcid.org/0000-0002-4186-5196
  • Ricardo Musule Lagunes Universidad Veracruzana/UV, Instituto de Investigaciones Forestales/INIFOR, Xalapa, Veracruz, México. https://orcid.org/0000-0001-8248-355X
  • Maria del Rosario Pineda-López Universidad Veracruzana/UV, Centro de Ecoalfabetización y Diálogo de Saberes/EcoDiálogo, Xalapa, Veracruz, México. https://orcid.org/0000-0002-8306-2586
  • Enrique Alarcón-Gutiérrez Universidad Veracruzana/UV, Instituto de Biotecnología y Ecología Aplicada/INBIOTECA, Xalapa, Veracruz, México. https://orcid.org/0000-0003-3686-820X
  • Lázaro Rafael Sánchez-Velásquez Universidad Veracruzana/UV, Instituto de Biotecnología y Ecología Aplicada/INBIOTECA, Xalapa, Veracruz, México. https://orcid.org/0000-0002-6014-8731




Coffee is an important crop in Mexico. Unfortunately, coffee production has been affected by coffee leaf rust (CLR). For Veracruz, the second state in Mexico with the major production of coffee, there are available reports of weekly CLR severity, but these are only informative without in-depth inferential analysis. We analyzed variations of CLR severity along the year in Veracruz with data from municipal weekly reports provided by Mexico’s federal government phytosanitary epidemiological monitoring coffee program. We selected reports dated in 2018 from nine municipalities and after calculations of mean monthly severity values, we conducted a one-way ANOVA (months as factors) of severity data. We compared this information with other coffee-producing
regions. Additionally, we explored the association of temperature, rainfall, and altitude with CLR severity using Principal Component Analysis and multiple linear regressions. Temperature and rainfall data were obtained from Mexican National Meteorological Service. We found that CLR severity in October, November, December, and January (months of harvest period) was significantly higher than values from March-June. During the harvest period, coffee plants allocate resources mainly for fruiting which competes in resources for other tasks such as defense and leaf growth, so this competition of resources can explain the positive relationship found between fruit load and CLR severity. This monthly variation of severity was similar to those reported in Chiapas, Guatemala, Colombia, Uganda, and Ethiopia. Our model (R2 = 0.948) showed a significant and negative effect of minimum and maximum temperature (in a range from 9.9 – 15.5 °C and 18.5 – 26.5 °C, respectively) on CLR severity, while the effect of rainfall (in a range from 32.0 – 359.9 mm) and medium
temperature (from 14.3 – 20.5 °C) was positive. With our study, we suggest applications of fungicides in March-June when coffee plantations are in leaf phenophase.

Key words: Altitude; Coffea arabica; Hemileia vastatrix; phenophase.


ALVES, M. C. et al. Ecological zoning of soybean rust, coffee rust and banana black sigatoka based on Brazilian climate changes. Procedia Environmental Sciences, 6:35-49, 2011.

ARROYO-ESQUIVEL, J.; SANCHEZ, F.; BARBOZA, L. A. Mathematical biosciences infection model for analyzing biological control of coffee rust using bacterial anti-fungal compounds. Mathematical Biosciences, 307:13-24, 2019.

AVELINO, J. et al. Shade tree Chloroleucon eurycyclum promotes coffee leaf rust by reducing uredospore wash-off by rain. Crop Protection, 129:105038, 2020.

AVELINO, J. et al. The coffee rust crises in Colombia and Central America (2008–2013): Impacts, plausible causes and proposed solutions. Food Security, 7(2):303-321, 2015.

AVELINO, J.; RIVAS, G. La roya anaranjada del cafeto. 2013. Available in: https://hal.science/hal-01071036 Access in: March 07, 2023.

AVELINO, J.; WILLOCQUET, L.; SAVARY, S. Effects of crop management patterns on coffee rust epidemics. Plant Pathology, 53(5):541-547, 2004.

BEBBER, D. P. Range-expanding pests and pathogens in a warming world. Annual Review of Phytopathology, 53:335-356, 2015.

BEBBER, D. P.; CASTILLO, A. D.; GURR, S. J. Modelling coffee leaf rust risk in Colombia with climate reanalysis data. Philosophical Transactions of the Royal Society B: Biological Sciences, 371:20150458, 2016.

BOUDROT, A. et al. Shade effects on the dispersal of airborne Hemileia vastatrix uredospores. Phytopathology, 106(6):572-580, 2016.

CHINNAPPA, C. C.; SREENIVASAN, M. S. Cytology of Hemileia Vastatrix. Caryologia, 21(1):75-82, 1968.

CONOVER, W. J.; IMAN, R. L. Rank transformations as a bridge between parametric and nonparametric statistics. The American Statistician, 35(3):124-129, 1981.

COUTINHO, T. A.; RIJKENBERG, F. H. J.; VAN ASCH, M. A. J. Appressorium formation by Hemileia vastatrix. Mycological Research, 97(8):951-956, 1993.

COUTTOLENC-BRENIS, E. et al. Prehasturial local resistance to coffee leaf rust in a Mexican cultivar involves expression of salicylic acid-responsive genes. PeerJ, 8:e8345, 2020.

DABA, G. et al. Seasonal and altitudinal differences in coffee leaf rust epidemics on coffee berry disease-resistant varieties in Southwest Ethiopia. Tropical Plant Pathology, 44(3):244-250, 2019.

DE JONG, E. J. Temperature requirements for germination, germ tube growth and appressorium formation of urediospores of Hemileia vastatrix. Netherlands Journal of Plant Pathology, 93(2):61-71, 1987.

DUPLESSIS, S. et al. Host adaptation and virulence in heteroecious rust fungi. Annual Review of Phytopathology, 59:403-422, 2021.

FERRANDINO, F. J. Effect of crop growth and canopy filtration on the dynamics of plant disease epidemics spread by aerially dispersed spores. Phytopathology, 98(5):492-503, 2008.

FINE, P. V. A. et al. The growth-defense trade-off and habitat specialization by plants in Amazonian forests. Ecology, 87(7):150-162, 2006.

FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS -FAOSTAT. Crops and livestock products. 2020. Available in: https://www.fao.org/faostat/en/#data/QCL. Access in: March 07, 2023.

GARRETT, K. A. et al. Climate change effects on plant disease: Genomes to ecosystems. Annual Review of Phytopathology, 44:489-509, 2006.

HERNÁNDEZ-SÁNCHEZ, M. I.; TRAVIESO-BELLO, A. C. Measures of adaptation to climate change among coffee organizations in the central zone of Veracruz, Mexico. Tropical and Subtropical Agroecosystems, 24(1):1-14, 2021.

HINDORF, H.; OMONDI, C. O. A review of three major fungal diseases of Coffea arabica L. in the rainforests of Ethiopia and progress in breeding for resistance in Kenya. Journal of Advanced Research, 2(2):109-120, 2011.

HINNAH, F. D. et al. Weather-based coffee leaf rust apparent infection rate modeling. International Journal of Biometeorology, 62:1847-1860, 2018.

LE-MAY, C. et al. Editorial: Plant pathogen life-history traits and adaptation to environmental constraints. Frontiers in Plant Science, 10:10-13, 2020.

LIBERT-AMICO, A.; ITUARTE-LIMA, C.; ELMQVIST, T. Learn ing from social–ecological crisis for legal resilience building: Multi-scale dynamics in the coffee rust epidemic. Sustainability Science, 15(2):485-501, 2020.

LIEBIG, T. et al. Interactive effects of altitude, microclimate and shading system on coffee leaf rust. Journal of Plant Interactions, 14(1):407-415, 2019.

LÓPEZ-GARCÍA, F. J. et al. Producción y calidad en variedades de café (Coffea arabica L.) en Veracruz, México. Revista Fitotecnia Mexicana, 39(3):297-304, 2016.

LU, L. et al. Comprehensive review of fungi on coffee. Pathogens, 11(4):411, 2022.

MAIA, T. et al. Variation in aggressiveness components in the Hemileia vastatrix population in Brazil. Journal of Phytopathology, 165(3):174-188, 2017.

MCCOOK, S.; VANDERMEER, J. The big rust and the red queen: Long-term perspectives on coffee rust research. Phytopathology, 105(9):1164-1173, 2015.

MERLE, I. et al. Unraveling the complexity of coffee leaf rust behavior and development in different Coffea arabica agro-ecosystems. Phytopathology, 110(2):418-427, 2020.

MEXICAN NATIONAL METEOROLOGICAL SERVICE - SMN. Información estadística climatológica. 2018. Available in: <https://smn.conagua.gob.mx/es/climatologia/informacion-climatologica/informacion-estadistica-climatologica>. Access in: March 09, 2023.

MEXICO’S NATIONAL SERVICE OF AGRO-FOOD HEALTH, SAFETY AND QUALITY - SENASICA. Roya del cafeto (Hemileia vastatrix Berkeley and Broome). 2019. Available in: http://www.cesavep.org/descargas/RDC/Ficha_Tecnica_Roya_del_cafeto.pdf> Access in: March 09, 2023.

MEXICO’S SECRETARY OF AGRICULTURE, LIVESTOCK, RURAL DEVELOPMENT, FISHERIES AND FOOD - SAGARPA; MEXICO’S NATIONAL SERVICE OF AGRO-FOOD HEALTH, SAFETY AND QUALITY - SENASICA. Manual técnico operativo 2018 para la vigilancia epidemiológica fitosanitaria en el cultivo del cafeto. 2018. Available in: <https://prod.senasica.gob.mx/SIRVEF/ContenidoPublico/Roya%20cafeto/Estrategia%20operativa/ManualOperativoRoyaCafeto.pdf>. Access in: March 09, 2023.


MEXICO’S SECRETARY OF AGRICULTURE, LIVESTOCK, RURAL DEVELOPMENT, FISHERIES AND FOOD - SAGARPA; MEXICO’S NATIONAL SERVICE OF AGRO-FOOD HEALTH, SAFETY AND QUALITY - SENASICA; LANREF - MEXICO’S National laboratory of epidemiological phytosanitary reference. Alerta Temprana Regional de Roya del Cafeto para el Estado de Veracruz. 2018. Available in: <https://www.royacafe.lanref.org.mx/ReportesSPEyC_doc/AlertaTempranaVeracruz2018-2019.pdf> Access in: March 09, 2023.

OBESO, J. R. Does defoliation affect reproductive output in herbaceous perennials and woody plants in different ways? Functional Ecology, 7(2):150-155, 1993.

OROZCO-MIRANDA, E. et al. El cafetal: La revista del caficultor. Manejo Integrado de la Roya de Cafeto. 2011. Available in: http://www.funsepa.net/guatemala/docs/2011_29_El_Cafetal.pdf Access in: March 09, 2023.

R CORE TEAM. The R Foundation. R version 3.5.2. The R Project for Statistical Computing. 2018. Available in: https://www.R-project.org/ Access in: March 09, 2023.

RAMIRO, D. A. et al. Biphasic haustorial differentiation of coffee rust (Hemileia vastatrix race II) associated with defence responses in resistant and susceptible coffee cultivars. Plant Pathology, 58(5):944-955, 2009.

RAYNER, R. W. Germination and penetration studies on coffee rust (Hemileia vastatrix B. & Br.). Annals of Applied Biology, 49(3):497-505, 1961.

RIVILLAS, C. A. et al. La roya del cafeto en Colombia: Impacto manejo y costos del control. Cenicafé, p. 1-53, 2011. (Boletín Técnico 36).

ROZO, Y. et al. Aggressiveness and genetic diversity of Hemileia vastatrix during an epidemic in Colombia. Journal of Phytopathology, 160(11-12):732-740, 2012.

SÁNCHEZ-HERNÁNDEZ, S. E. et al. Calidad del café (Coffea Arabica L.) en dos sistemas agroforestales en el centro de Veracruz, México. Agroproductividad, 11(4):80-86, 2018.

SAS ONDEMAND FOR ACADEMICS. SAS Institute Inc., SAS Campus Drive, Cary, North Carolina 27513, USA. 2022. Available in: https://welcome.oda.sas.com/ Access in: March 09, 2023.

SEIWA, K. Trade-offs between seedling growth and survival in deciduous broadleaved trees in a temperate forest. Annals of Botany, 99(3):537-544, 2007.

SERVIÇO DE INFORMAÇÃO ALIMENTAR E PESQUEIRA - SIAP. Anuario estadístico de la producción agrícola. 2021. Available in: https://nube.siap.gob.mx/cierreagricola. Access in: March 07, 2023.

SILVA, M. D. C. et al. An overview of the mechanisms involved in Coffee-Hemileia vastatrix interactions: Plant and pathogen perspectives. Agronomy, 12:326-356, 2022.

SOUZA, A. F. D. et al. Chemical approaches to manage coffee leaf rust in drip irrigated trees. Australasian Plant Pathology, 40:293-300, 2011.

TALHINHAS, P. et al. The coffee leaf rust pathogen Hemileia vastatrix: One and a half centuries around the tropics. Molecular Plant Pathology, 18(8):1039-1051, 2017.

TONIUTTI, L. et al. Influence of environmental conditions and genetic background of arabica coffee (C. arabica L) on leaf rust (Hemileia vastatrix) pathogenesis. Frontiers in Plant Science, 8:2025, 2017.

TORRES-CASTILLO, N. E. et al. Impact of climate change and early development of coffee rust - An overview of control strategies to preserve organic cultivars in Mexico. Science of The Total Environment, 738:140225, 2020.

VANDERMEER, J.; HAJIAN-FOROOSHANI, Z.; PERFECTO, I. The dynamics of the coffee rust disease: An epidemiological approach using network theory. European Journal of Plant Pathology, 150(4):1001-1010, 2018.

ZAMBOLIM, L. Current status and management of coffee leaf rust in Brazil. Tropical Plant Pathology, 41(1):1-8, 2016.

ZULUAGA, C. M.; BUTIRICÁ-CÉSPEDES, P.; MARÍN-MONTOYA, M. Fundamentals of rust fungi (Fungi: Basidiomycota) and their phylogenetic relationships. Acta Biológica Colombiana, 14(1):41-56, 2009.




How to Cite

PALE-EZQUIVEL, I. .; LAGUNES, R. M.; PINEDA-LÓPEZ, M. del R.; ALARCÓN-GUTIÉRREZ, E.; SÁNCHEZ-VELÁSQUEZ, L. R. Temporal progress of coffee leaf rust and environmental conditions affecting severity in Veracruz State, Mexico. Coffee Science - ISSN 1984-3909, [S. l.], v. 18, p. e182047, 2023. DOI: 10.25186/.v18i.2047. Disponível em: http://www.coffeescience.ufla.br/index.php/Coffeescience/article/view/2047. Acesso em: 4 jun. 2023.